There’s something truly delightful about the first bite of a warm muffin fresh from the oven, isn’t there? The comforting aroma of cardamom and cinnamon wafts through my kitchen, instantly lifting my spirits. When I set out to create a recipe that combines my love for wholesome snacks with a protein-packed boost, I stumbled upon these incredible Cardamom Spiced Zucchini Pumpkin Protein Muffins.
Perfectly moist and flavorful, these muffins sneak in nutritious vegetables while delivering a satisfying taste that feels indulgent—but without the guilt! Whether you’re dashing out the door for breakfast or seeking a delicious afternoon pick-me-up, these muffins are just what you need. Plus, they fit seamlessly into your meal prep routine while encouraging a healthier lifestyle. So grab your mixing bowl and let’s whip up a batch that will charm everyone, even those who claim they don’t like vegetables!

Why are these protein muffins a must-try?
Wholesome ingredients: Packed with nutritious zucchini and pumpkin, these muffins are a delightful way to sneak in veggies while satisfying your sweet tooth.
Flavor explosion: The warm spices of cardamom and cinnamon create an aroma that fills your kitchen, making every bite a comforting experience.
Easy preparation: With straightforward instructions and a quick baking time, you’ll have these muffins ready in no time.
Customization options: Tailor them to your taste with various substitutions like almond flour or flavored protein powder for a personal twist.
Guilt-free indulgence: Enjoy a moist, spiced treat that balances protein, healthy fats, and carbohydrates without sacrificing flavor.
Elevate your snack game and try these muffins for your next breakfast or afternoon pick-me-up!
Protein Muffin Ingredients
For the Muffins
• Whole Wheat Pastry Flour – Provides structure and fiber; you can substitute with almond flour for a gluten-free option.
• Vanilla Protein Powder – Boosts protein content; use a different flavored protein for added variety.
• Baking Powder – Acts as a leavening agent for rise; ensure it’s fresh for the best results.
• Salt – Balances the sweetness and enhances flavors.
• Ground Spices (Cardamom, Cinnamon, Ginger, Nutmeg, Cloves, Allspice) – Adds depth and warmth; feel free to adjust spices to your liking.
• Pumpkin Puree – Contributes moistness and flavor; applesauce can be used as a tasty substitute.
• Coconut Sugar – Offers a caramel-like sweetness; brown sugar or maple syrup can work as replacements.
• Melted Coconut Oil – Keeps muffins moist and rich; unsalted butter or vegetable oil can be alternates.
• Egg – Acts as a binder and adds moisture; for a vegan option, replace with a flaxseed egg.
• Plant-Based Milk – Adds needed moisture; any non-dairy milk alternative will do.
• Shredded Zucchini – Integrates veggies and moisture; ensure it’s well-drained to avoid sogginess.
These protein muffins are not only scrumptious but also packed with nutritious ingredients!
How to Make Protein Muffins
Preheat the Oven: Preheat your oven to 375°F (190°C). Prepare a muffin tin by lining it with muffin liners or greasing it for easy release.
Whisk Dry Ingredients: In a large mixing bowl, whisk together the whole wheat pastry flour, vanilla protein powder, baking powder, spices, and salt until evenly combined—this will ensure your muffins have a delicious flavor throughout.
Combine Wet Ingredients: In another bowl, mix together the pumpkin puree, coconut sugar, melted coconut oil, and egg. Stir until the mixture is smooth and well-blended.
Add Milk and Vanilla: Pour in the plant-based milk and vanilla extract to the pumpkin mixture, stirring until everything is fully integrated.
Combine Wet and Dry Ingredients: Gradually fold the dry ingredients into the wet ingredients, mixing gently until just combined—avoid overmixing for tender muffins.
Incorporate Zucchini: Gently fold in the well-drained shredded zucchini, ensuring it’s mixed evenly throughout the batter without overworking it.
Fill Muffin Cups: Spoon the batter into the prepared muffin cups, filling them about two-thirds full to allow room for rising.
Bake the Muffins: Place the muffin tin in the oven and bake for 15-20 minutes, or until a toothpick inserted into the center comes out clean—this ensures your muffins are perfectly baked!
Cool and Enjoy: Let the muffins cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely.
Optional: Enjoy warm with a smear of almond butter for an extra treat!
Exact quantities are listed in the recipe card below.

Expert Tips for Perfect Protein Muffins
• Drain Zucchini Well: Make sure your shredded zucchini is thoroughly drained to prevent sogginess in your muffins.
• Avoid Overmixing: To achieve a tender crumb, mix the wet and dry ingredients just until combined—overmixing can lead to dense muffins.
• Room Temperature Ingredients: Bring your egg and milk to room temperature for better consistency in the batter, leading to a fluffy finish.
• Proper Muffin Filling: Fill your muffin tins about two-thirds full to avoid overflow and ensure even baking; this helps maintain their beautiful shape.
• Check for Doneness: Test your muffins a couple of minutes early with a toothpick; they should come out clean for the perfect protein muffins!
Protein Muffin Variations
Feel free to unleash your creativity and tailor these muffins to match your taste buds!
- Gluten-Free: Replace whole wheat pastry flour with almond flour for a gluten-free delight that still tastes amazing.
- Nuts Galore: Add a handful of chopped walnuts, pecans, or almonds for a delightful crunch and added nutrition.
- Sweet Surprises: Stir in dark chocolate chips or dried fruit like cranberries for a sweet twist that enhances the flavor profile.
- Spice It Up: Boost the warmth by adding a pinch of cayenne pepper for a surprising kick that contrasts beautifully with the sweetness.
- Fruit-Packed: Substitute pumpkin puree with mashed bananas or sweet potatoes for a different fruity take; each option adds unique flavor and moisture.
- Dairy-Free Fluff: Swap cow’s milk for any plant-based alternative, like almond or oat milk, ensuring a creamy, moist muffin.
- Eggless Option: For a vegan-friendly version, use a flaxseed egg by combining one tablespoon of ground flaxseed with three tablespoons of water. It binds beautifully!
- Carrot Twist: Use grated carrots instead of zucchini for a subtly sweet alternative that pairs nicely with the warm spices.
With these variations, you can play with flavors and textures to create the perfect muffin for your taste!
Make Ahead Options
These Cardamom Spiced Zucchini Pumpkin Protein Muffins are perfect for meal prep, saving you time on busy mornings! You can prepare the batter up to 24 hours in advance. Simply mix all the wet ingredients with dry ingredients, then cover the bowl and refrigerate overnight to keep it fresh. When you’re ready to bake, just fold in the drained shredded zucchini and fill the muffin cups as directed, baking them for 15-20 minutes until golden. If you prefer, bake a batch in advance and store the muffins in an airtight container in the fridge for up to 5 days or freeze them for up to 3 months—they’ll still be just as delicious when you need a quick snack.
What to Serve with Cardamom Spiced Zucchini Pumpkin Protein Muffins?
Elevate your muffin experience with delightful pairings that complement their warm, spiced flavors beautifully.
- Almond Butter: A creamy spread that adds richness and protein, perfect for slathering on warm muffins.
- Greek Yogurt: Serve a dollop of tangy Greek yogurt alongside for a refreshing contrast and extra protein boost.
- Fresh Berries: Bright, juicy berries bring a burst of freshness and a pop of color to your plate.
- Chai Tea: The aromatic spices of chai harmonize beautifully with the muffins’ own cardamom notes, creating a cozy beverage pairing.
- Honey Drizzle: A touch of honey enhances the natural sweetness, making each bite a little more indulgent.
- Savory Egg Scramble: Serve alongside fluffy scrambled eggs for a protein-packed breakfast that balances sweet and savory flavors.
- Cream Cheese: A simple spread will add a decadent touch that pairs surprisingly well with the spice of the muffins.
- Cinnamon Hot Cocoa: Cozy up with a cup of warm cocoa to complement the muffins’ spices perfectly, perfect for chilly days.
How to Store and Freeze Protein Muffins
Room Temperature: Store your muffins in an airtight container for up to 2 days. Enjoy them fresh for the best taste!
Fridge: Keep muffins in a sealed container for up to 5 days to maintain moisture and flavor. A simple reheat in the microwave before serving brings them back to life.
Freezer: These protein muffins freeze beautifully! Place them in a freezer-safe bag for up to 3 months. Remember to thaw overnight in the fridge before enjoying.
Reheating: For a warm treat, pop them in the microwave for 15-20 seconds or let them sit at room temperature for a little while before savoring!

Cardamom Spiced Zucchini Pumpkin Protein Muffins Recipe FAQs
How do I select the best zucchini for this recipe?
Absolutely! Look for medium-sized zucchinis, as they tend to be the most flavorful and tender. Choose ones that are firm and glossy—if they have dark spots or feel soft, they may be overripe. For optimal flavor and texture, fresh zucchinis will make a world of difference in your protein muffins!
What’s the best way to store leftover muffins?
Very easy! For room temperature storage, keep your muffins in an airtight container for up to 2 days. For the best moisture retention, I recommend placing them in a sealed container in the fridge, where they can last for up to 5 days. Just remember to reheat them for about 15-20 seconds in the microwave for that ‘freshly baked’ experience!
Can you freeze these protein muffins? How do I do it?
You bet! Freezing is a fantastic way to keep these tasty treats on hand. To freeze them, allow your muffins to cool completely, then place them in a freezer-safe bag or container—making sure to label the bag with the date. They can be frozen for up to 3 months. When you’re ready to enjoy one, simply thaw it overnight in the fridge and reheat in the microwave for a warm, delightful snack!
What should I do if my muffins are too dry?
If your muffins turn out too dry, it may be due to overmixing or too much flour. Make sure to gently mix the ingredients until just combined, as overmixing can lead to dense muffins. If you find yourself troubleshooting with a dry batch, try adding an extra tablespoon of plant-based milk or yogurt to the batter next time for added moisture!
Are these muffins suitable for someone with allergies?
Great question! This recipe is versatile. You can easily make it gluten-free by substituting the whole wheat pastry flour with almond or gluten-free flour blends. If you’re making adjustments for allergies, be cautious with your protein powder and check for any allergens it might contain. For vegan alternatives, using a flaxseed egg and plant-based milk works wonderfully!
What can I do to enhance the flavor of my muffins?
Certainly! To amp up the flavor, consider adding some mix-ins such as walnuts, pecans, or even dark chocolate chips for a delightful crunch. Additionally, experiment with the spices; a little extra nutmeg or cloves can elevate the warm profile of your protein muffins even more. Trust your palate and have fun with it!

Protein Muffins: Delightfully Spiced Zucchini & Pumpkin Treats
Equipment
- Muffin tin
- - Mixing bowls
- Whisk
- - Measuring cups
- - Measuring spoons
Ingredients
For the Muffins
- 1 ½ cups Whole Wheat Pastry Flour Can substitute with almond flour for a gluten-free option
- 1 scoop Vanilla Protein Powder Use a different flavored protein for added variety
- 2 tsps Baking Powder Ensure it’s fresh for the best results
- ½ tsp Salt Balances the sweetness
- 1 tsp Ground Spices (Cardamom, Cinnamon, Ginger, Nutmeg, Cloves, Allspice) Adjust to your liking
- 1 cup Pumpkin Puree Applesauce can be used as a substitute
- ½ cup Coconut Sugar Brown sugar or maple syrup can work as replacements
- ¼ cup Melted Coconut Oil Unsalted butter or vegetable oil can be alternates
- 1 large Egg For a vegan option, replace with a flaxseed egg
- ½ cup Plant-Based Milk Any non-dairy milk alternative will do
- 1 cup Shredded Zucchini Ensure it’s well-drained to avoid sogginess
Instructions
How to Make Protein Muffins
- Preheat your oven to 375°F (190°C). Prepare a muffin tin by lining it with muffin liners or greasing it for easy release.
- In a large mixing bowl, whisk together the whole wheat pastry flour, vanilla protein powder, baking powder, spices, and salt until evenly combined.
- In another bowl, mix together the pumpkin puree, coconut sugar, melted coconut oil, and egg until smooth.
- Pour in the plant-based milk and vanilla extract to the pumpkin mixture, stirring until fully integrated.
- Gradually fold the dry ingredients into the wet ingredients, mixing gently until just combined.
- Gently fold in the well-drained shredded zucchini.
- Spoon the batter into the prepared muffin cups, filling them about two-thirds full.
- Place the muffin tin in the oven and bake for 15-20 minutes, or until a toothpick inserted into the center comes out clean.
- Let the muffins cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely.

























