There’s a delightful thrill in transforming simple ingredients into something extraordinary. Imagine the smell of warm, freshly baked bagels wafting through your kitchen, with a healthy twist that leaves you feeling energized and satisfied. Enter my Protein Bagels with Greek Yogurt—a recipe that has completely redefined my mornings.
With just five ingredients and under 30 minutes of your time, these bagels are not only a breeze to whip up, but they also pack a powerful punch of 18 grams of protein each! The texture is perfectly chewy on the outside while remaining light and fluffy inside, making them feel indulgent without the guilt. Whether you’re revamping your breakfast routine or seeking a delicious snack, these bagels are versatile enough to cater to any craving.
Top them with your favorite spreads, experiment with flavors, and enjoy knowing you’ve crafted a nutritious meal that keeps you far away from the fast-food rut. Join me, and let’s dive into this delightful bagel experience!

Why love protein bagels with Greek yogurt?
Simplicity: With just five ingredients, you can create a healthful masterpiece in under 30 minutes!
Protein Power: Each bagel boasts an impressive 18 grams of protein, making it a filling choice for breakfast or a snack.
Versatile Toppings: Get creative! Top with cream cheese, avocado, or even smoked salmon for endless flavor combinations.
Texture Triumph: Enjoy a chewy exterior and fluffy interior that rivals traditional bagels, minus the guilt.
Gluten-Free Goodness: These bagels cater to different dietary needs, ensuring everyone can enjoy a delicious treat.
Make sure to store leftovers for quick meals by following my tips for making-ahead options!
Protein Bagels with Greek Yogurt Ingredients
For the Bagel Dough
- Gluten-Free All-Purpose Flour – This flour provides the necessary structure; for a quick alternative, use self-rising flour without added baking powder.
- Baking Powder – It helps create a light and airy texture; essential for achieving that classic bagel rise.
- Salt – A little salt enhances the flavor and balances the sweetness of the yogurt.
- Plain Unsweetened Greek Yogurt – Acts as the binding agent while adding protein and moisture, making these protein bagels with Greek yogurt a guilt-free option.
For the Topping
- Everything But The Bagel Seasoning – This savory blend elevates the flavor profile, but feel free to customize with toppings like sesame seeds or cheese for variety.
How to Make Protein Bagels with Greek Yogurt
Mix Dry Ingredients: In a large mixing bowl, combine the gluten-free all-purpose flour, baking powder, and salt. Stir until well combined, creating a wonderful base for your bagels.
Combine with Yogurt: Gently fold in the plain unsweetened Greek yogurt. Mix until a dough begins to form, ensuring it clings together nicely. You’ll know it’s ready when it’s slightly sticky yet manageable.
Shape the Dough: Divide your dough into two equal portions. Shape each piece into a smooth ball, making sure to knead it gently for the perfect texture.
Form the Bagels: Roll each ball into a long rope, then pinch the ends together to form a classic bagel shape. Aim for a thickness that promotes that delightful chewy exterior.
Preheat the Air Fryer: Set your air fryer to 350°F (175°C). While it warms up, lightly spray the bagels with non-stick spray or brush them with an egg wash for that golden finish.
Air Fry to Perfection: Place the bagels in the air fryer basket and cook for 8 minutes. Carefully flip them and air fry for an additional 2-3 minutes until they’re golden brown and ready to enjoy.
Serve and Enjoy: Once cooked, serve these protein bagels warm with your favorite toppings. The possibilities are endless!
Optional: Serve with a spread of cream cheese or avocado for an extra treat.
Exact quantities are listed in the recipe card below.

Protein Bagels with Greek Yogurt Variations
Feel free to get creative and make these delicious bagels your own!
Sweet Twist: Add cinnamon and sugar to the dough for a delightful sweet bagel experience. Perfect for a cozy breakfast.
Cheesy Goodness: Mix in shredded cheddar or mozzarella into the dough for a savory twist that melts in your mouth.
Herb-Infused: Toss in dried oregano or rosemary to the dough, giving your bagels an aromatic flavor that’s sure to impress.
Spicy Kick: Mix chili flakes into the batter for a zesty gluten-free bagel that wakes up your taste buds.
Nutty Crunch: Add chopped nuts or seeds like sunflower or pumpkin seeds to the dough for an added layer of texture and flavor.
Savory Toppings: Try spreading with pesto or cream cheese along with sliced tomatoes for a fresh and satisfying twist.
Fun Shapes: Roll the dough into mini bagel bites instead of full-sized bagels, perfect for kids or a fun snack!
Veggie Boost: Incorporate finely chopped spinach or zucchini into the dough for an extra nutrient boost without compromising on flavor.
Make Ahead Options
These protein bagels with Greek yogurt are perfect for meal prep enthusiasts! You can mix the dry ingredients (gluten-free flour, baking powder, and salt) up to 24 hours in advance and store them in an airtight container. Additionally, you can shape the bagels and refrigerate them for up to 3 days before cooking. To maintain quality, ensure they’re well wrapped to prevent them from drying out. When you’re ready to enjoy your bagels, simply air fry them straight from the fridge without thawing, following the original cooking instructions. You’ll have a quick, satisfying breakfast ready in no time—just as delicious as fresh-baked!
What to Serve with Protein Bagels with Greek Yogurt?
Elevate your bagel experience with these delightful pairings that will transform your breakfast or snack into something extraordinary.
Creamy Avocado Toast: The buttery richness of avocado contrasts beautifully with the chewy bagel, adding a nutritious twist to your meal.
Savory Smoked Salmon: Add a touch of elegance with smoked salmon that enhances the protein profile and brings a delicate flavor to each bite.
Fresh Fruit Salad: A refreshing medley of fruits balances the savory bagel, providing a burst of sweetness and vibrant colors to your plate.
Herb Cream Cheese: Spread velvety herb-infused cream cheese for a luscious complement, making every bite irresistibly creamy and flavorful.
Greek Yogurt Dip: Pair your bagels with a tangy Greek yogurt dip mixed with herbs and spices, enhancing the protein content while adding a cool contrast.
Nut Butter Delight: For a sweeter option, try almond or peanut butter spread; the nutty flavor adds depth and pairs exceptionally well with the bagel’s texture.
Berry Smoothie: Enjoy a refreshing berry smoothie with your bagels. The sweetness and creaminess are perfect for balancing the savory aspects of your meal.
Hot Herbal Tea: Sipping on a warm cup of herbal tea provides a soothing experience that wonderfully complements the chewy goodness of these protein-packed bagels.
Explore these enticing combinations and redefine your breakfast or snack time bliss!
Expert Tips for Protein Bagels with Greek Yogurt
- Mix Well: Ensure the dough is thoroughly combined for the best texture. If it’s too dry, add a little more Greek yogurt.
- Don’t Overwork: Gently knead the dough to maintain a fluffy texture. Overworking will lead to tough bagels instead of light and chewy ones.
- Flour Alternatives: If using self-rising flour, skip the baking powder and salt. This will prevent the bagels from being too salty or rising poorly.
- Air Fryer Tips: Keep an eye on your bagels in the air fryer to prevent over-browning. They cook quickly, so check a minute early if unsure.
- Add Flavor: Experiment with different seasonings or toppings like cheese or sesame seeds for customized protein bagels with Greek yogurt that cater to your taste.
How to Store and Freeze Protein Bagels with Greek Yogurt
Room Temperature: Keep bagels in an airtight container to maintain freshness for up to 3 days; they’ll still taste delightful!
Fridge: Store in the refrigerator for up to 5 days. Wrap individually in plastic wrap to prevent them from drying out.
Freezer: For longer storage, freeze the bagels in a single layer on a baking sheet, then transfer to a freezer-safe bag for up to 3 months.
Reheating: To enjoy, simply reheat in the microwave for 20-30 seconds or toast them directly from frozen. These protein bagels with Greek yogurt are perfect for quick breakfasts anytime!

Protein Bagels with Greek Yogurt Recipe FAQs
What type of flour is best for protein bagels with Greek yogurt?
For these bagels, gluten-free all-purpose flour is ideal as it provides the necessary structure. If you need a quick alternative, you can opt for self-rising flour—just be sure to omit the baking powder and salt to maintain the right balance.
How should I store protein bagels with Greek yogurt?
To keep them fresh, store your bagels in an airtight container at room temperature for up to 3 days. If you want to maintain their softness, wrap them individually in plastic wrap and store in the fridge for up to 5 days.
Can I freeze protein bagels with Greek yogurt?
Absolutely! To freeze, place the bagels in a single layer on a baking sheet and put them in the freezer until solid. Once frozen, transfer them to a labeled freezer-safe bag. They can last up to 3 months in the freezer. When you’re ready to enjoy, reheat them in the microwave for 20-30 seconds or toast them directly from frozen.
What if my dough is too sticky or dry?
If your dough feels too sticky, add a little more gluten-free flour, a tablespoon at a time, until you reach the right consistency. Conversely, if the dough is too dry, mix in a bit more Greek yogurt until it holds together nicely. The key is to find that perfect balance for a light and fluffy texture!
Can I customize the flavors in my protein bagels with Greek yogurt?
Yes! Get creative with your toppings and flavors. You can mix in spices, like garlic powder, or even cheese into the dough for a savory twist. Try adding some cinnamon and sugar for a sweet variation, or top with avocado or smoked salmon for delicious bites that suit any meal!
Are protein bagels with Greek yogurt safe for pets or individuals with allergies?
While the ingredients in these bagels are safe for most people, always check for allergy concerns. Greek yogurt can be high in lactose, so if lactose intolerant, it’s best to avoid or substitute with lactose-free yogurt. As for pets, it’s not advisable to feed them bread or baked goods, so keep these tasty treats just for yourself!

Protein Bagels with Greek Yogurt: Your Guilt-Free Breakfast Hero
Equipment
- Air fryer
Ingredients
For the Bagel Dough
- 2 cups Gluten-Free All-Purpose Flour Use self-rising flour for a quick alternative.
- 2 teaspoons Baking Powder Essential for achieving bagel rise.
- 1 teaspoon Salt Enhances flavor.
- 1 cup Plain Unsweetened Greek Yogurt Acts as a binding agent.
For the Topping
- 2 tablespoons Everything But The Bagel Seasoning Feel free to customize toppings.
Instructions
How to Make Protein Bagels with Greek Yogurt
- In a large mixing bowl, combine the gluten-free all-purpose flour, baking powder, and salt.
- Gently fold in the plain unsweetened Greek yogurt until a dough begins to form.
- Divide the dough into two equal portions and shape each piece into a smooth ball.
- Roll each ball into a long rope and pinch the ends together to form a bagel.
- Set your air fryer to 350°F (175°C) and lightly spray the bagels.
- Place the bagels in the air fryer basket and cook for 8 minutes, flipping for an additional 2-3 minutes.
- Serve warm with your favorite toppings.
























